Preferred Name

SAM

Synonyms
Definitions

Sequence Alignment/Map (SAM) format for alignment of nucleotide sequences (e.g. sequencing reads) to (a) reference sequence(s). May contain base-call and alignment qualities and other data. The format supports short and long reads (up to 128Mbp) produced by different sequencing platforms and is used to hold mapped data within the GATK and across the Broad Institute, the Sanger Centre, and throughout the 1000 Genomes project.

ID

http://edamontology.org/format_2573

comment

The format supports short and long reads (up to 128Mbp) produced by different sequencing platforms and is used to hold mapped data within the GATK and across the Broad Institute, the Sanger Centre, and throughout the 1000 Genomes project.

Created in

beta12orEarlier

Documentation

https://samtools.github.io/hts-specs/SAMv1.pdf

hasDbXref

https://samtools.github.io/hts-specs/SAMv1.pdf

hasDefinition

Sequence Alignment/Map (SAM) format for alignment of nucleotide sequences (e.g. sequencing reads) to (a) reference sequence(s). May contain base-call and alignment qualities and other data.

inSubset

http://edamontology.org/bio

http://edamontology.org/formats

label

SAM

prefixIRI

format_2573

prefLabel

SAM

subClassOf

http://edamontology.org/format_2057

http://edamontology.org/format_2920

http://edamontology.org/format_2330

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