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The Data Use Ontology
Last uploaded:
February 23, 2021
Acronym | DUO |
Visibility | Public |
Description | An ontology based on the consent codes decsription from the Dyke et al. paper at http://dx.doi.org/10.1371/journal.pgen.1005772. It allows to semantically tag datasets with restriction about their usage, making them discoverable automatically based on the authorization level of users, or intended usage. This resource is based on the OBO Foundry principles, and its use is under review by the Broad Institute ad the European Genome-phenome Archive (EGA) at EMBL-EBI. |
Status | Production |
Format | OWL |
Contact | Melanie Courtot, mcourtot@ebi.ac.uk |
Groups | OBO Foundry |
Version | Released | Uploaded | Downloads |
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unknown (Parsed, Indexed, Metrics, Annotator) | 02/23/2021 | 02/23/2021 | OWL | CSV | RDF/XML | Diff |
unknown (Archived) | 02/03/2020 | 02/03/2020 | OWL | Diff |
unknown (Archived) | 06/05/2019 | 06/05/2019 | OWL | Diff |
unknown (Archived) | 06/03/2019 | 06/03/2019 | OWL | Diff |
unknown (Archived) | 01/07/2019 | 01/07/2019 | OWL | Diff |
unknown (Archived) | 12/18/2018 | 12/18/2018 | OWL | Diff |
unknown (Archived) | 10/16/2017 | 10/16/2017 | OWL | Diff |
unknown (Archived) | 02/17/2017 | 09/20/2017 | OWL |
more... |
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Id | http://purl.obolibrary.org/obo/BFO_0000001
http://purl.obolibrary.org/obo/BFO_0000001
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Preferred Name | entity |
Type | http://www.w3.org/2002/07/owl#Class |
All Properties
label |
entity
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prefLabel |
entity
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editor note |
BFO 2 Reference: In all areas of empirical inquiry we encounter general terms of two sorts. First are general terms which refer to universals or types:animaltuberculosissurgical procedurediseaseSecond, are general terms used to refer to groups of entities which instantiate a given universal but do not correspond to the extension of any subuniversal of that universal because there is nothing intrinsic to the entities in question by virtue of which they – and only they – are counted as belonging to the given group. Examples are: animal purchased by the Emperortuberculosis diagnosed on a Wednesdaysurgical procedure performed on a patient from Stockholmperson identified as candidate for clinical trial #2056-555person who is signatory of Form 656-PPVpainting by Leonardo da VinciSuch terms, which represent what are called ‘specializations’ in [81
Entity doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example Werner Ceusters 'portions of reality' include 4 sorts, entities (as BFO construes them), universals, configurations, and relations. It is an open question as to whether entities as construed in BFO will at some point also include these other portions of reality. See, for example, 'How to track absolutely everything' at http://www.referent-tracking.com/_RTU/papers/CeustersICbookRevised.pdf
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isDefinedBy | |
elucidation |
An entity is anything that exists or has existed or will exist. (axiom label in BFO2 Reference: [001-001])
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BFO OWL specification label |
entity
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prefixIRI |
BFO:0000001
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subClassOf | |
type | |
example of usage |
your body mass index
Verdi’s Requiem
Julius Caesar
the Second World War
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BFO CLIF specification label |
Entity
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