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SNOMED CT Standard Ontology Based on the Ontology for General Medical Science
Last uploaded:
June 19, 2017
Acronym | SCTO |
Visibility | Public |
View of ontology | SNOMEDCT |
Description | The Systematized Nomenclature of Medicine Clinical Term Ontology (SCTO) attempts to create a basic OWL 2 ontology for SNOMED CT terminology. The ontology is built based on the Ontology of General Medical Science (OGMS). This ontology implements the SNOMED CT concept model by adding the appropriate axioms to its top-level concepts. The resulting ontology can prevent redundancies and inconsistencies in this large terminology. Moreover, the terminology maintenance can become more accurate. Finally, SNOMED CT can be used in a healthcare environment to create more complex post-coordinated expressions and constraints in a more accurate manner. |
Status | Alpha |
Format | OWL |
Contact | Francesco Franda, ffranda@buffalo.edu Shaker El-Sappagh, shaker_elsapagh@yahoo.com |
Categories | Health, Human, Vocabularies |
Version | Released | Uploaded | Downloads |
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Version 2.0 (Parsed, Indexed, Metrics, Annotator) | 06/12/2017 | 06/19/2017 | OWL | CSV | RDF/XML | Diff |
Version 2.0 (Archived) | 06/12/2017 | 06/12/2017 | OWL |
Version 1.0 (Archived) | 01/11/2017 | 01/12/2017 | OWL | Diff |
Version 1.0 (Archived) | 01/11/2017 | 01/11/2017 | OWL |
Version 1.0 (Archived) | 01/11/2017 | 01/11/2017 | OWL | Diff |
Version 1.0 (Archived) | 01/11/2017 | 01/06/2017 | OWL |
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Jump to:
Id | http://purl.obolibrary.org/obo/BFO_0000001
http://purl.obolibrary.org/obo/BFO_0000001
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Preferred Name | entity |
Type | http://www.w3.org/2002/07/owl#Class |
All Properties
label |
entity
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prefLabel |
entity
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editor note |
BFO 2 Reference: In all areas of empirical inquiry we encounter general terms of two sorts. First are general terms which refer to universals or types:animaltuberculosissurgical procedurediseaseSecond, are general terms used to refer to groups of entities which instantiate a given universal but do not correspond to the extension of any subuniversal of that universal because there is nothing intrinsic to the entities in question by virtue of which they – and only they – are counted as belonging to the given group. Examples are: animal purchased by the Emperortuberculosis diagnosed on a Wednesdaysurgical procedure performed on a patient from Stockholmperson identified as candidate for clinical trial #2056-555person who is signatory of Form 656-PPVpainting by Leonardo da VinciSuch terms, which represent what are called ‘specializations’ in [81
Entity doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example Werner Ceusters 'portions of reality' include 4 sorts, entities (as BFO construes them), universals, configurations, and relations. It is an open question as to whether entities as construed in BFO will at some point also include these other portions of reality. See, for example, 'How to track absolutely everything' at http://www.referent-tracking.com/_RTU/papers/CeustersICbookRevised.pdf
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isDefinedBy | |
elucidation |
An entity is anything that exists or has existed or will exist. (axiom label in BFO2 Reference: [001-001])
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BFO OWL specification label |
entity
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prefixIRI |
BFO:0000001
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subClassOf | |
type | |
example of usage |
your body mass index
Verdi’s Requiem
Julius Caesar
the Second World War
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BFO CLIF specification label |
Entity
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Add NCBO Web Widgets to your site for SCTO
Widget type | Widget demonstration |
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Step 2: Follow the Instructions
For more help visit NCBO Widget Wiki |
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Example 1 (start typing the class name to get its full URI)
Example 2 (get the ID for a class) Example 3 (get the preferred name for a class) Step 2: Follow the Instructions
For more help visit NCBO Widget Wiki |
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Step 2: Follow the InstructionsCopy the code below and paste it to your HTML page <iframe frameborder="0" src="/widgets/visualization?ontology=SCTO&class=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FOGMS_0000078&apikey=YOUR_API_KEY"></iframe> For more help visit NCBO Widget Wiki |
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Step 2: Follow the InstructionsCopy the code below and paste it to your HTML page <link rel="stylesheet" type="text/css" href="/widgets/jquery.ncbo.tree.css"> <script src="/widgets/jquery.ncbo.tree-2.0.2.js"></script> <div id="widget_tree"></div> var widget_tree = $("#widget_tree").NCBOTree({ apikey: "YOUR_API_KEY", ontology: "SCTO" }); You can also view a detailed demonstration For more help visit NCBO Widget Wiki |